GAARD windows of interest

Avrankou_coluzzii_Delta
Baguida_gambiae_Delta
Korle-Bu_coluzzii_Delta
Madina_gambiae_Delta
Obuasi_gambiae_Delta
Baguida_gambiae_PM
Korle-Bu_coluzzii_PM
Madina_gambiae_PM
Obuasi_gambiae_PM

Avrankou_coluzzii_Delta

Avrankou_coluzzii_Delta_peak_filter

 

Avrankou_coluzzii_Delta_2R:45413683-45433265
Avrankou_coluzzii_Delta_X:8745589-8778998

Avrankou_coluzzii_Delta_2R_45413683-45433265

 

Avrankou_coluzzii_Delta_2R:45413683-45433265_overview

 

Avrankou_coluzzii_Delta_2R:45413683-45433265_dendrogram

 

Avrankou_coluzzii_Delta_2R:45413683-45433265_haplotypes

 

Avrankou_coluzzii_Delta_X_8745589-8778998

 

Avrankou_coluzzii_Delta_X:8745589-8778998_overview

 

Avrankou_coluzzii_Delta_X:8745589-8778998_dendrogram

 

Avrankou_coluzzii_Delta_X:8745589-8778998_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 11 22 12
dead 14 16 4

 

Baguida_gambiae_Delta

Baguida_gambiae_Delta_peak_filter

 

Baguida_gambiae_Delta_2R:33967209-33981960
Baguida_gambiae_Delta_3L:3059554-3112922

Baguida_gambiae_Delta_2R_33967209-33981960

 

Baguida_gambiae_Delta_2R:33967209-33981960_overview

 

Baguida_gambiae_Delta_2R:33967209-33981960_dendrogram

 

Baguida_gambiae_Delta_2R:33967209-33981960_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 31 21 2
dead 31 3 0

 

Baguida_gambiae_Delta_3L_3059554-3112922

 

Baguida_gambiae_Delta_3L:3059554-3112922_overview

 

Baguida_gambiae_Delta_3L:3059554-3112922_dendrogram

 

Baguida_gambiae_Delta_3L:3059554-3112922_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 37 8 9
dead 11 21 2

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 39 14 1
dead 28 6 0

 

Korle-Bu_coluzzii_Delta

Korle-Bu_coluzzii_Delta_peak_filter

 

Korle-Bu_coluzzii_Delta_2R:28145243-28168331
Korle-Bu_coluzzii_Delta_2R:39682306-39698081
Korle-Bu_coluzzii_Delta_3R:50971406-51021318
Korle-Bu_coluzzii_Delta_X:14653714-14668824
Korle-Bu_coluzzii_Delta_X:14668824-14684264
Korle-Bu_coluzzii_Delta_X:15670884-15702974
Korle-Bu_coluzzii_Delta_X:15702974-15756306

Korle-Bu_coluzzii_Delta_2R_28145243-28168331

 

Korle-Bu_coluzzii_Delta_2R:28145243-28168331_overview

 

Korle-Bu_coluzzii_Delta_2R:28145243-28168331_dendrogram

 

Korle-Bu_coluzzii_Delta_2R:28145243-28168331_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 52 7 0
dead 52 30 1

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 46 12 1
dead 69 13 1

 

Contingency table for cluster_3:

    phenotype         wt         het         hom    
alive 50 9 0
dead 67 16 0

 

Contingency table for cluster_4:

    phenotype         wt         het         hom    
alive 48 11 0
dead 72 11 0

 

Korle-Bu_coluzzii_Delta_2R_39682306-39698081

 

Korle-Bu_coluzzii_Delta_2R:39682306-39698081_overview

 

Korle-Bu_coluzzii_Delta_2R:39682306-39698081_dendrogram

 

Korle-Bu_coluzzii_Delta_2R:39682306-39698081_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 47 12 0
dead 65 16 2

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 42 16 1
dead 77 6 0

 

Korle-Bu_coluzzii_Delta_3R_50971406-51021318

 

Korle-Bu_coluzzii_Delta_3R:50971406-51021318_overview

 

Korle-Bu_coluzzii_Delta_3R:50971406-51021318_dendrogram

 

Korle-Bu_coluzzii_Delta_3R:50971406-51021318_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 44 13 2
dead 53 26 4

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 45 14 0
dead 75 7 1

 

Contingency table for cluster_3:

    phenotype         wt         het         hom    
alive 49 10 0
dead 72 10 1

 

Korle-Bu_coluzzii_Delta_X_14653714-14668824

 

Korle-Bu_coluzzii_Delta_X:14653714-14668824_overview

 

Korle-Bu_coluzzii_Delta_X:14653714-14668824_dendrogram

 

Korle-Bu_coluzzii_Delta_X:14653714-14668824_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 30 26 3
dead 58 24 1

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 49 9 1
dead 69 12 2

 

Contingency table for cluster_3:

    phenotype         wt         het         hom    
alive 51 8 0
dead 70 13 0

 

Korle-Bu_coluzzii_Delta_X_14668824-14684264

 

Korle-Bu_coluzzii_Delta_X:14668824-14684264_overview

 

Korle-Bu_coluzzii_Delta_X:14668824-14684264_dendrogram

 

Korle-Bu_coluzzii_Delta_X:14668824-14684264_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 31 25 3
dead 58 24 1

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 47 11 1
dead 69 12 2

 

Contingency table for cluster_3:

    phenotype         wt         het         hom    
alive 51 8 0
dead 70 13 0

 

Korle-Bu_coluzzii_Delta_X_15670884-15702974

 

Korle-Bu_coluzzii_Delta_X:15670884-15702974_overview

 

Korle-Bu_coluzzii_Delta_X:15670884-15702974_dendrogram

 

Korle-Bu_coluzzii_Delta_X:15670884-15702974_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 13 32 14
dead 37 35 11

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 52 7 0
dead 69 14 0

 

Contingency table for cluster_3:

    phenotype         wt         het         hom    
alive 53 6 0
dead 68 15 0

 

Korle-Bu_coluzzii_Delta_X_15702974-15756306

 

Korle-Bu_coluzzii_Delta_X:15702974-15756306_overview

 

Korle-Bu_coluzzii_Delta_X:15702974-15756306_dendrogram

 

Korle-Bu_coluzzii_Delta_X:15702974-15756306_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 12 38 9
dead 38 35 10

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 52 7 0
dead 68 14 1

 

Contingency table for cluster_3:

    phenotype         wt         het         hom    
alive 52 7 0
dead 69 14 0

 

Madina_gambiae_Delta

Madina_gambiae_Delta_peak_filter

 

Madina_gambiae_Delta_2R:28401363-28416200
Madina_gambiae_Delta_2R:28454838-28474602

Madina_gambiae_Delta_2R_28401363-28416200

 

Madina_gambiae_Delta_2R:28401363-28416200_overview

 

Madina_gambiae_Delta_2R:28401363-28416200_dendrogram

 

Madina_gambiae_Delta_2R:28401363-28416200_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 13 33 18
dead 14 21 2

 

Madina_gambiae_Delta_2R_28454838-28474602

 

Madina_gambiae_Delta_2R:28454838-28474602_overview

 

Madina_gambiae_Delta_2R:28454838-28474602_dendrogram

 

Madina_gambiae_Delta_2R:28454838-28474602_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 8 33 23
dead 12 20 5

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 50 13 1
dead 26 10 1

 

Obuasi_gambiae_Delta

Obuasi_gambiae_Delta_peak_filter

 

Obuasi_gambiae_Delta_2R:28250033-28262588
Obuasi_gambiae_Delta_2R:28262588-28274893
Obuasi_gambiae_Delta_2R:28274893-28289873
Obuasi_gambiae_Delta_2R:28289873-28306606
Obuasi_gambiae_Delta_2R:28306605-28322681
Obuasi_gambiae_Delta_2R:28322681-28337951
Obuasi_gambiae_Delta_2R:28337951-28354693
Obuasi_gambiae_Delta_2R:28354692-28369784
Obuasi_gambiae_Delta_2R:28369784-28391434
Obuasi_gambiae_Delta_2R:28391433-28405240
Obuasi_gambiae_Delta_2R:28405239-28421116
Obuasi_gambiae_Delta_2R:28421116-28439220
Obuasi_gambiae_Delta_2R:28439219-28456407
Obuasi_gambiae_Delta_2R:28456407-28475225
Obuasi_gambiae_Delta_2R:28475225-28496115
Obuasi_gambiae_Delta_2R:28496114-28515482
Obuasi_gambiae_Delta_2R:28515481-28531112

Obuasi_gambiae_Delta_2R_28250033-28262588

 

Obuasi_gambiae_Delta_2R:28250033-28262588_overview

 

Obuasi_gambiae_Delta_2R:28250033-28262588_dendrogram

 

Obuasi_gambiae_Delta_2R:28250033-28262588_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 11 16 0
dead 39 12 0

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 23 4 0
dead 33 16 2

 

Obuasi_gambiae_Delta_2R_28262588-28274893

 

Obuasi_gambiae_Delta_2R:28262588-28274893_overview

 

Obuasi_gambiae_Delta_2R:28262588-28274893_dendrogram

 

Obuasi_gambiae_Delta_2R:28262588-28274893_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 10 15 2
dead 39 12 0

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 23 4 0
dead 33 16 2

 

Obuasi_gambiae_Delta_2R_28274893-28289873

 

Obuasi_gambiae_Delta_2R:28274893-28289873_overview

 

Obuasi_gambiae_Delta_2R:28274893-28289873_dendrogram

 

Obuasi_gambiae_Delta_2R:28274893-28289873_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 10 14 3
dead 39 12 0

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 23 4 0
dead 33 16 2

 

Obuasi_gambiae_Delta_2R_28289873-28306606

 

Obuasi_gambiae_Delta_2R:28289873-28306606_overview

 

Obuasi_gambiae_Delta_2R:28289873-28306606_dendrogram

 

Obuasi_gambiae_Delta_2R:28289873-28306606_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 9 14 4
dead 39 12 0

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 23 4 0
dead 33 17 1

 

Obuasi_gambiae_Delta_2R_28306605-28322681

 

Obuasi_gambiae_Delta_2R:28306605-28322681_overview

 

Obuasi_gambiae_Delta_2R:28306605-28322681_dendrogram

 

Obuasi_gambiae_Delta_2R:28306605-28322681_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 10 14 3
dead 38 13 0

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 23 4 0
dead 33 17 1

 

Obuasi_gambiae_Delta_2R_28322681-28337951

 

Obuasi_gambiae_Delta_2R:28322681-28337951_overview

 

Obuasi_gambiae_Delta_2R:28322681-28337951_dendrogram

 

Obuasi_gambiae_Delta_2R:28322681-28337951_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 9 14 4
dead 37 14 0

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 23 4 0
dead 34 16 1

 

Contingency table for cluster_3:

    phenotype         wt         het         hom    
alive 24 3 0
dead 34 16 1

 

Obuasi_gambiae_Delta_2R_28337951-28354693

 

Obuasi_gambiae_Delta_2R:28337951-28354693_overview

 

Obuasi_gambiae_Delta_2R:28337951-28354693_dendrogram

 

Obuasi_gambiae_Delta_2R:28337951-28354693_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 9 14 4
dead 36 15 0

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 24 3 0
dead 33 17 1

 

Contingency table for cluster_3:

    phenotype         wt         het         hom    
alive 22 5 0
dead 36 14 1

 

Obuasi_gambiae_Delta_2R_28354692-28369784

 

Obuasi_gambiae_Delta_2R:28354692-28369784_overview

 

Obuasi_gambiae_Delta_2R:28354692-28369784_dendrogram

 

Obuasi_gambiae_Delta_2R:28354692-28369784_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 8 15 4
dead 35 16 0

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 24 3 0
dead 32 17 2

 

Contingency table for cluster_3:

    phenotype         wt         het         hom    
alive 21 6 0
dead 36 14 1

 

Obuasi_gambiae_Delta_2R_28369784-28391434

 

Obuasi_gambiae_Delta_2R:28369784-28391434_overview

 

Obuasi_gambiae_Delta_2R:28369784-28391434_dendrogram

 

Obuasi_gambiae_Delta_2R:28369784-28391434_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 8 15 4
dead 35 15 1

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 24 3 0
dead 32 17 2

 

Contingency table for cluster_3:

    phenotype         wt         het         hom    
alive 21 6 0
dead 35 15 1

 

Obuasi_gambiae_Delta_2R_28391433-28405240

 

Obuasi_gambiae_Delta_2R:28391433-28405240_overview

 

Obuasi_gambiae_Delta_2R:28391433-28405240_dendrogram

 

Obuasi_gambiae_Delta_2R:28391433-28405240_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 7 16 4
dead 34 15 2

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 24 3 0
dead 32 17 2

 

Contingency table for cluster_3:

    phenotype         wt         het         hom    
alive 21 6 0
dead 35 15 1

 

Obuasi_gambiae_Delta_2R_28405239-28421116

 

Obuasi_gambiae_Delta_2R:28405239-28421116_overview

 

Obuasi_gambiae_Delta_2R:28405239-28421116_dendrogram

 

Obuasi_gambiae_Delta_2R:28405239-28421116_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 9 11 7
dead 32 17 2

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 21 6 0
dead 35 15 1

 

Contingency table for cluster_3:

    phenotype         wt         het         hom    
alive 24 3 0
dead 33 16 2

 

Obuasi_gambiae_Delta_2R_28421116-28439220

 

Obuasi_gambiae_Delta_2R:28421116-28439220_overview

 

Obuasi_gambiae_Delta_2R:28421116-28439220_dendrogram

 

Obuasi_gambiae_Delta_2R:28421116-28439220_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 7 13 7
dead 29 18 4

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 24 3 0
dead 33 16 2

 

Contingency table for cluster_3:

    phenotype         wt         het         hom    
alive 21 6 0
dead 36 14 1

 

Obuasi_gambiae_Delta_2R_28439219-28456407

 

Obuasi_gambiae_Delta_2R:28439219-28456407_overview

 

Obuasi_gambiae_Delta_2R:28439219-28456407_dendrogram

 

Obuasi_gambiae_Delta_2R:28439219-28456407_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 4 14 9
dead 27 17 7

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 23 4 0
dead 32 17 2

 

Contingency table for cluster_3:

    phenotype         wt         het         hom    
alive 20 7 0
dead 36 14 1

 

Obuasi_gambiae_Delta_2R_28456407-28475225

 

Obuasi_gambiae_Delta_2R:28456407-28475225_overview

 

Obuasi_gambiae_Delta_2R:28456407-28475225_dendrogram

 

Obuasi_gambiae_Delta_2R:28456407-28475225_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 3 15 9
dead 25 19 7

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 23 4 0
dead 32 17 2

 

Contingency table for cluster_3:

    phenotype         wt         het         hom    
alive 20 7 0
dead 38 12 1

 

Obuasi_gambiae_Delta_2R_28475225-28496115

 

Obuasi_gambiae_Delta_2R:28475225-28496115_overview

 

Obuasi_gambiae_Delta_2R:28475225-28496115_dendrogram

 

Obuasi_gambiae_Delta_2R:28475225-28496115_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 7 12 8
dead 28 18 5

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 19 8 0
dead 39 11 1

 

Obuasi_gambiae_Delta_2R_28496114-28515482

 

Obuasi_gambiae_Delta_2R:28496114-28515482_overview

 

Obuasi_gambiae_Delta_2R:28496114-28515482_dendrogram

 

Obuasi_gambiae_Delta_2R:28496114-28515482_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 11 9 7
dead 30 16 5

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 17 10 0
dead 38 12 1

 

Obuasi_gambiae_Delta_2R_28515481-28531112

 

Obuasi_gambiae_Delta_2R:28515481-28531112_overview

 

Obuasi_gambiae_Delta_2R:28515481-28531112_dendrogram

 

Obuasi_gambiae_Delta_2R:28515481-28531112_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 13 11 3
dead 35 12 4

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 14 12 1
dead 38 12 1

 

Baguida_gambiae_PM

Baguida_gambiae_PM_peak_filter

 

Baguida_gambiae_PM_X:15411876-15495650
Baguida_gambiae_PM_X:9165646-9222299
Baguida_gambiae_PM_X:9222298-9273975
Baguida_gambiae_PM_X:9273975-9317640
Baguida_gambiae_PM_X:9317639-9346605

Baguida_gambiae_PM_X_15411876-15495650

 

Baguida_gambiae_PM_X:15411876-15495650_overview

 

Baguida_gambiae_PM_X:15411876-15495650_dendrogram

 

Baguida_gambiae_PM_X:15411876-15495650_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 17 14 4
dead 13 12 5

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 24 11 0
dead 12 16 2

 

Contingency table for cluster_3:

    phenotype         wt         het         hom    
alive 20 11 4
dead 24 5 1

 

Baguida_gambiae_PM_X_9165646-9222299

 

Baguida_gambiae_PM_X:9165646-9222299_overview

 

Baguida_gambiae_PM_X:9165646-9222299_dendrogram

 

Baguida_gambiae_PM_X:9165646-9222299_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 6 13 16
dead 9 13 8

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 24 10 1
dead 10 14 6

 

Baguida_gambiae_PM_X_9222298-9273975

 

Baguida_gambiae_PM_X:9222298-9273975_overview

 

Baguida_gambiae_PM_X:9222298-9273975_dendrogram

 

Baguida_gambiae_PM_X:9222298-9273975_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 16 13 6
dead 13 15 2

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 24 10 1
dead 10 14 6

 

Baguida_gambiae_PM_X_9273975-9317640

 

Baguida_gambiae_PM_X:9273975-9317640_overview

 

Baguida_gambiae_PM_X:9273975-9317640_dendrogram

 

Baguida_gambiae_PM_X:9273975-9317640_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 24 10 1
dead 10 14 6

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 20 11 4
dead 19 11 0

 

Baguida_gambiae_PM_X_9317639-9346605

 

Baguida_gambiae_PM_X:9317639-9346605_overview

 

Baguida_gambiae_PM_X:9317639-9346605_dendrogram

 

Baguida_gambiae_PM_X:9317639-9346605_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 24 10 1
dead 11 14 5

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 19 14 2
dead 22 8 0

 

Korle-Bu_coluzzii_PM

Korle-Bu_coluzzii_PM_peak_filter

 

Korle-Bu_coluzzii_PM_2R:38097626-38111826
Korle-Bu_coluzzii_PM_2R:54371673-54397846
Korle-Bu_coluzzii_PM_3R:28482794-28505651
Korle-Bu_coluzzii_PM_3R:28505651-28533744
Korle-Bu_coluzzii_PM_3R:28563392-28595112
Korle-Bu_coluzzii_PM_3R:2929236-2946500

Korle-Bu_coluzzii_PM_2R_38097626-38111826

 

Korle-Bu_coluzzii_PM_2R:38097626-38111826_overview

 

Korle-Bu_coluzzii_PM_2R:38097626-38111826_dendrogram

 

Korle-Bu_coluzzii_PM_2R:38097626-38111826_haplotypes

 

Korle-Bu_coluzzii_PM_2R_54371673-54397846

 

Korle-Bu_coluzzii_PM_2R:54371673-54397846_overview

 

Korle-Bu_coluzzii_PM_2R:54371673-54397846_dendrogram

 

Korle-Bu_coluzzii_PM_2R:54371673-54397846_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 30 22 5
dead 34 9 5

 

Korle-Bu_coluzzii_PM_3R_28482794-28505651

 

Korle-Bu_coluzzii_PM_3R:28482794-28505651_overview

 

Korle-Bu_coluzzii_PM_3R:28482794-28505651_dendrogram

 

Korle-Bu_coluzzii_PM_3R:28482794-28505651_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 34 20 3
dead 14 28 6

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 34 19 4
dead 40 8 0

 

Contingency table for cluster_3:

    phenotype         wt         het         hom    
alive 39 17 1
dead 41 6 1

 

Korle-Bu_coluzzii_PM_3R_28505651-28533744

 

Korle-Bu_coluzzii_PM_3R:28505651-28533744_overview

 

Korle-Bu_coluzzii_PM_3R:28505651-28533744_dendrogram

 

Korle-Bu_coluzzii_PM_3R:28505651-28533744_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 37 17 3
dead 15 29 4

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 26 24 7
dead 31 16 1

 

Contingency table for cluster_3:

    phenotype         wt         het         hom    
alive 39 15 3
dead 40 7 1

 

Korle-Bu_coluzzii_PM_3R_28563392-28595112

 

Korle-Bu_coluzzii_PM_3R:28563392-28595112_overview

 

Korle-Bu_coluzzii_PM_3R:28563392-28595112_dendrogram

 

Korle-Bu_coluzzii_PM_3R:28563392-28595112_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 20 27 10
dead 20 25 3

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 38 17 2
dead 18 25 5

 

Contingency table for cluster_3:

    phenotype         wt         het         hom    
alive 38 16 3
dead 41 6 1

 

Korle-Bu_coluzzii_PM_3R_2929236-2946500

 

Korle-Bu_coluzzii_PM_3R:2929236-2946500_overview

 

Korle-Bu_coluzzii_PM_3R:2929236-2946500_dendrogram

 

Korle-Bu_coluzzii_PM_3R:2929236-2946500_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 24 26 7
dead 7 27 14

 

Madina_gambiae_PM

Madina_gambiae_PM_peak_filter

 

Madina_gambiae_PM_2R:54255612-54278008

Madina_gambiae_PM_2R_54255612-54278008

 

Madina_gambiae_PM_2R:54255612-54278008_overview

 

Madina_gambiae_PM_2R:54255612-54278008_dendrogram

 

Madina_gambiae_PM_2R:54255612-54278008_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 31 7 0
dead 14 12 1

 

Obuasi_gambiae_PM

Obuasi_gambiae_PM_peak_filter

 

Obuasi_gambiae_PM_2R:3474360-3509400
Obuasi_gambiae_PM_3L:30477135-30487616
Obuasi_gambiae_PM_3L:30487615-30497759
Obuasi_gambiae_PM_3L:30497758-30506894
Obuasi_gambiae_PM_3L:30506893-30516797
Obuasi_gambiae_PM_3L:30534828-30545854
Obuasi_gambiae_PM_3L:30554459-30562573
Obuasi_gambiae_PM_3L:30562572-30578511
Obuasi_gambiae_PM_3L:30578511-30587941
Obuasi_gambiae_PM_3L:30587941-30597762
Obuasi_gambiae_PM_3L:30597761-30607138
Obuasi_gambiae_PM_3L:30607137-30617085
Obuasi_gambiae_PM_3L:30617085-30624950
Obuasi_gambiae_PM_3L:30624949-30635698
Obuasi_gambiae_PM_3L:30635698-30646602
Obuasi_gambiae_PM_3L:30646601-30657763
Obuasi_gambiae_PM_3L:30657762-30667355
Obuasi_gambiae_PM_3L:30667355-30678119
Obuasi_gambiae_PM_3L:30678119-30687769
Obuasi_gambiae_PM_3L:30687769-30697180
Obuasi_gambiae_PM_3R:48454456-48494640

Obuasi_gambiae_PM_2R_3474360-3509400

 

Obuasi_gambiae_PM_2R:3474360-3509400_overview

 

Obuasi_gambiae_PM_2R:3474360-3509400_dendrogram

 

Obuasi_gambiae_PM_2R:3474360-3509400_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 1 2 51
dead 1 16 33

 

Obuasi_gambiae_PM_3L_30477135-30487616

 

Obuasi_gambiae_PM_3L:30477135-30487616_overview

 

Obuasi_gambiae_PM_3L:30477135-30487616_dendrogram

 

Obuasi_gambiae_PM_3L:30477135-30487616_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 37 16 1
dead 17 28 5

 

Obuasi_gambiae_PM_3L_30487615-30497759

 

Obuasi_gambiae_PM_3L:30487615-30497759_overview

 

Obuasi_gambiae_PM_3L:30487615-30497759_dendrogram

 

Obuasi_gambiae_PM_3L:30487615-30497759_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 33 20 1
dead 14 29 7

 

Obuasi_gambiae_PM_3L_30497758-30506894

 

Obuasi_gambiae_PM_3L:30497758-30506894_overview

 

Obuasi_gambiae_PM_3L:30497758-30506894_dendrogram

 

Obuasi_gambiae_PM_3L:30497758-30506894_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 36 17 1
dead 13 31 6

 

Obuasi_gambiae_PM_3L_30506893-30516797

 

Obuasi_gambiae_PM_3L:30506893-30516797_overview

 

Obuasi_gambiae_PM_3L:30506893-30516797_dendrogram

 

Obuasi_gambiae_PM_3L:30506893-30516797_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 35 19 0
dead 15 29 6

 

Obuasi_gambiae_PM_3L_30534828-30545854

 

Obuasi_gambiae_PM_3L:30534828-30545854_overview

 

Obuasi_gambiae_PM_3L:30534828-30545854_dendrogram

 

Obuasi_gambiae_PM_3L:30534828-30545854_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 35 18 1
dead 15 31 4

 

Obuasi_gambiae_PM_3L_30554459-30562573

 

Obuasi_gambiae_PM_3L:30554459-30562573_overview

 

Obuasi_gambiae_PM_3L:30554459-30562573_dendrogram

 

Obuasi_gambiae_PM_3L:30554459-30562573_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 36 17 1
dead 16 29 5

 

Obuasi_gambiae_PM_3L_30562572-30578511

 

Obuasi_gambiae_PM_3L:30562572-30578511_overview

 

Obuasi_gambiae_PM_3L:30562572-30578511_dendrogram

 

Obuasi_gambiae_PM_3L:30562572-30578511_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 36 16 2
dead 16 29 5

 

Obuasi_gambiae_PM_3L_30578511-30587941

 

Obuasi_gambiae_PM_3L:30578511-30587941_overview

 

Obuasi_gambiae_PM_3L:30578511-30587941_dendrogram

 

Obuasi_gambiae_PM_3L:30578511-30587941_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 35 17 2
dead 15 28 7

 

Obuasi_gambiae_PM_3L_30587941-30597762

 

Obuasi_gambiae_PM_3L:30587941-30597762_overview

 

Obuasi_gambiae_PM_3L:30587941-30597762_dendrogram

 

Obuasi_gambiae_PM_3L:30587941-30597762_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 35 17 2
dead 15 28 7

 

Obuasi_gambiae_PM_3L_30597761-30607138

 

Obuasi_gambiae_PM_3L:30597761-30607138_overview

 

Obuasi_gambiae_PM_3L:30597761-30607138_dendrogram

 

Obuasi_gambiae_PM_3L:30597761-30607138_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 35 17 2
dead 15 28 7

 

Obuasi_gambiae_PM_3L_30607137-30617085

 

Obuasi_gambiae_PM_3L:30607137-30617085_overview

 

Obuasi_gambiae_PM_3L:30607137-30617085_dendrogram

 

Obuasi_gambiae_PM_3L:30607137-30617085_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 34 18 2
dead 15 27 8

 

Obuasi_gambiae_PM_3L_30617085-30624950

 

Obuasi_gambiae_PM_3L:30617085-30624950_overview

 

Obuasi_gambiae_PM_3L:30617085-30624950_dendrogram

 

Obuasi_gambiae_PM_3L:30617085-30624950_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 33 18 3
dead 15 25 10

 

Obuasi_gambiae_PM_3L_30624949-30635698

 

Obuasi_gambiae_PM_3L:30624949-30635698_overview

 

Obuasi_gambiae_PM_3L:30624949-30635698_dendrogram

 

Obuasi_gambiae_PM_3L:30624949-30635698_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 30 21 3
dead 10 28 12

 

Obuasi_gambiae_PM_3L_30635698-30646602

 

Obuasi_gambiae_PM_3L:30635698-30646602_overview

 

Obuasi_gambiae_PM_3L:30635698-30646602_dendrogram

 

Obuasi_gambiae_PM_3L:30635698-30646602_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 30 21 3
dead 10 28 12

 

Obuasi_gambiae_PM_3L_30646601-30657763

 

Obuasi_gambiae_PM_3L:30646601-30657763_overview

 

Obuasi_gambiae_PM_3L:30646601-30657763_dendrogram

 

Obuasi_gambiae_PM_3L:30646601-30657763_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 28 24 2
dead 11 29 10

 

Obuasi_gambiae_PM_3L_30657762-30667355

 

Obuasi_gambiae_PM_3L:30657762-30667355_overview

 

Obuasi_gambiae_PM_3L:30657762-30667355_dendrogram

 

Obuasi_gambiae_PM_3L:30657762-30667355_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 28 24 2
dead 11 30 9

 

Obuasi_gambiae_PM_3L_30667355-30678119

 

Obuasi_gambiae_PM_3L:30667355-30678119_overview

 

Obuasi_gambiae_PM_3L:30667355-30678119_dendrogram

 

Obuasi_gambiae_PM_3L:30667355-30678119_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 27 25 2
dead 10 31 9

 

Obuasi_gambiae_PM_3L_30678119-30687769

 

Obuasi_gambiae_PM_3L:30678119-30687769_overview

 

Obuasi_gambiae_PM_3L:30678119-30687769_dendrogram

 

Obuasi_gambiae_PM_3L:30678119-30687769_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 26 26 2
dead 11 29 10

 

Obuasi_gambiae_PM_3L_30687769-30697180

 

Obuasi_gambiae_PM_3L:30687769-30697180_overview

 

Obuasi_gambiae_PM_3L:30687769-30697180_dendrogram

 

Obuasi_gambiae_PM_3L:30687769-30697180_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 26 26 2
dead 9 30 11

 

Obuasi_gambiae_PM_3R_48454456-48494640

 

Obuasi_gambiae_PM_3R:48454456-48494640_overview

 

Obuasi_gambiae_PM_3R:48454456-48494640_dendrogram

 

Obuasi_gambiae_PM_3R:48454456-48494640_haplotypes

 

Contingency table for cluster_1:

    phenotype         wt         het         hom    
alive 24 24 6
dead 39 9 2

 

Contingency table for cluster_2:

    phenotype         wt         het         hom    
alive 43 10 1
dead 38 9 3

 

Contingency table for cluster_3:

    phenotype         wt         het         hom    
alive 44 10 0
dead 39 10 1